Publications

Journal Articles


The Year 2017

An endophytic Basidiomycete, Grammothele lineata, isolated from Corchorus olitorius, produces paclitaxel that shows cytotoxicity.
Avizit Das, Mohammad Imtiazur Rahman, Ahlan Sabah Ferdous, Al- Amin, Mohammad Mahbubur Ahman, Nilufar Nahar, Md. Aftab Uddin, Mohammad Riazul Islam, Haseena Khan.
Plos One. https://doi.org/10.1371/journal.pone.0178612

Comparative genomics of two jute species and insight into fibre biogenesis.
Md Shahidul Islam, Jennifer A. Saito […] Haseena Khan, Maqsudul Alam
Nature Plants 3, Article number: 16223

Modification of Monolignol Biosynthetic Pathway in Jute: Different Gene, Different Consequence.
Farhana Shafrin, Ahlan Sabah Ferdous, Suprovath Kumar Sarkar, Rajib Ahmed, Al- Amin, Kawsar Hossain, Mrinmoy Sarker, Jorge Rencoret, Ana Gutiérrez, Jose C. del Rio, Neeti Sanan-Mishra & Haseena Khan
Scientific Reports 7, Article number: 39984 (2017)

The Year 2016

Identification and expression profiling of microRNAs and their corresponding targets related to phytoremediation of heavy metals in jute (Corchorus olitorius var. O-9897).
Shaila Hauqe, Ahlan Sabah Ferdous, Suprovath Kumar Sarker, Md. Tariqul Islam, Kawsar Hossain, Haseena Khan
Bioresearch Communications Volume 02, Issue 01: 116-119.

The Year 2015

Artificial miRNA‑mediated down‑regulation of two monolignoid biosynthetic genes (C3H and F5H) cause reduction in lignin content in jute.
Farhana Shafrin, Sudhanshu Sekhar Das, Neeti Sanan-Mishra, Haseena Khan.
Plant Molecular Biology Volume 89, Issue 4, pp 511-527

High-Throughput Sequencing Reveals Diverse Sets of Conserved, Nonconserved, and Species-Specific miRNAs in Jute.
Md. Tariqul Islam, Ahlan Sabah Ferdous, Rifat Ara Najnin, Suprovath Kumar Sarker, and Haseena Khan.
International Journal of Genomics. Volume 2015 Article ID 125048.

Identification of stable reference genes for quantitative PCR in jute under different experimental conditions: An essential assessment for gene expression analysis.
Ferdous, Ahlan Sabah; Islam, Md Tariqul; Alam, Salma Sultana; Haseena Khan.
Australian Journal of Crop Science Volume 9 Issue 7

Corchorus L. and Hibiscus L.: Molecular Phylogeny Helps to Understand Their Relative Evolution and Dispersal Routes.
Arif Mohammad Tanmoy, Md. Maksudul Alam, Mahdi Muhammad Moosa, Ajit Ghosh, Waise Quarni, Farzana Ahmed, Nazia Rifat Zaman, Sazia Sharmin, Md. Tariqul Islam, Md. Shahidul Islam, Kawsar Hossain, Rajib Ahmed and Haseena Khan.
Bioresearch Communications. Volume 1, Issue 1.

A diverse community of jute (Corchorus spp.) endophytes reveals mutualistic host–microbe interactions.
Rifat Ara Najnin, Farhana Shafrin, Ahsan Habib Polash, Aubhishek Zaman, Amzad Hossain, Taha Taha, Rajib Ahmed, Jannatul Ferdoush Tuli, Rashu Barua, Abu Ashfaqur Sajib & Haseena Khan.
Annals of Microbiology. September 2015, Volume 65, Issue 3, pp 1615–1626

The Year 2014

Jute (Corchorus olitorius var. O-72) stem lignin: variation in content with age.
Tanmoy, MA Alum, MS Islam, T Farzana, H Khan.
Bangladesh Journal of Botany 43(3):309-314.

The Year 2013

Improved salt tolerance of jute plants expressing the katE gene from Escherichia coli
Md. Shahidul Islam, Muhammad Shafiul Azam, Sazia Sharmin , Abu Ashfaqur Sajib, Md.Maksudul Alam, Md. Shamim Reza, Rajib Ahmed, Haseena Khan,
Turk J Biol (DOI: 10.3906/biy-1205-52)

The Year 2012

Xyloglucan endotransglycosylase/hydrolase genes from a susceptible and resistant jute species show opposite expression pattern profile during/following Macrophomina phaseolina infection (2012)
Sazia Sharmin, Muhammad Shafiul Azam. Md. Shahidul Islam, Abu Ashfaqur Sajib, Niaz Mahmood, A. M. Mahedi Hasan, Rajib Ahmed, Kishwar Sultana, Haseena Khan
Communicative and Integrative Biology 5(6)

Estimation of Genome Size of Jute (Corchorus capsularis (L.) var. CVL-1 using Flow Cytometry (2012)
Ryo Akashi, Nurun N. Fancy, Arif M. Tanmoy and Haseena Khan
Plant Tissue Cult. & Biotech. 22(1) 83-86

Members of Ectocarpus siliculosus F-box Family Are Subjected to Differential Selective Forces (2012)
Niaz Mahmood, Mahdi Muhammad Moosa, S. Abdul Matin and Haseena Khan.
Interdisciplinary Bio Central 4, 1-7

The Year 2011

A Simple and Swift Method for Isolating High Quality RNA from Jute (Corchorus spp,) (2011)
Niaz Mahmood, Razib Ahmed, Mohammed Shafiul Azam and Haseena Khan
Plant Tissue Cult. & Biotech. 21(2) 207-211

Identification of a novel dehydration responsive transcript from tossa jute (Corcohrus olitorius L.) (2011)
Sazia Sharmin, Mahdi Muhammad Moosa, Md. Shahidul Islam, Inamul Kabir, Arzuba Akter and Haseena Khan.
Journal of Cell and Molecular Biology 9(1): 21-29

Combination of two rare mutations causes β-thalassaemia in a Bangladeshi patient (2011)
Mahdi Muhammad Moosa, Mustak Ibn Ayub, AMA Emran Bashar & Golam Sarwardi, Waqar Khan, Haseena Khan and Sabina Yeasmin.
Genetics and Molecular Biology, 34(3): 406–409

Identification and characterization of jute LTR retrotransposons: Their abundance, heterogeneity and transcriptional activity (2011)
Salim Ahmed, MD Shafiuddin, Muhammad Shafiul Azam, Md. Shahidul Islam, Ajit Ghosh and Haseena Khan.
Mobile Genetic Elements 1: 18 - 28

The Year 2010

SSR Markers Linked to Mite (Polyphagotarsonemus latus Banks) Resistance in Jute (Corchorus olitorius L,) (2010)
Ajit Ghosh, Sazia Sharmin, Sazzadul Islam, Minhazuddin Pahloan, Shahidul Islam and Haseena Khan.
Czech Journal of Genetics and Plant Breeding 46:64-74

Mutation Analysis of the HBB Gene in Selected Bangladeshi b-Thalassemic Individuals: Presence of Rare Mutations (2010)
Mustak Ibn Ayub, Mahdi Muhammad Moosa, Golam Sarwardi, Waqar Khan, Haseena Khan and Sabina Yeasmin Genetic Testing and
Molecular Biomarkers.14 (3):299-302

In silico analysis of jute SSR library and experimental verification of assembly (2010).
Samira R, Moosa MM, Alam MM, Keka SI, Khan H.
POJ 3(2):57-65

A Putative Leucine-Rich Repeat Receptor-Like Kinase of Jute Involved in Stress Response.
Alam MM, Sharmin S, Nabi Z, Mondal SI, Islam MS, Nayeem SB, Shoyaib M, Khan H. (2010).
Plant Molecular Biology Reporter 28(3): 394-402.

The Year 2009

Identification and characterization of ribosomal protein S8 gene of jute (2009)
Salim Ahmed, Md. Maksudul Alam, Md. Sazzadul Islam, MD. Shafiuddin, Md. Mosharrof Hossain Mondal, Md. Amzad Hossain and Haseena Khan.
Plant Tissue Cult. & Biotech. 19(2) 207-215

A computational and experimental approach for developing jute ESTs from genomic clones (2009).
Salim Ahmed, Md. Zinnatun Nabi , Md. Maksudul Alam, Md. Sazzadul Islam, Rozalynne Samira, Mahdi M Moosa and Haseena Khan.
Australian Journal of Crop Science 3(6): 322-328

Genetic diversity and relationship in jute (Corchorus spp) revealed by SSR markers (2009).
Saaimatul Huq, Md. Shahidul Islam, Abu Ashfaqur Sajib, Nadim Ashraf, Samiul Haque and Haseena Khan.
Bangladesh Journal of Botany 38(2): 161-169

A putative leucine-rich repeat receptor-like kinase of jute involved in stress response. (2009)
Md. Maksudul Alam, Sazia Sharmin, Zinnatun Nabi, Shakhinur Islam Mondal, Md. Shahidul Islam, Sarmah Bin Nayeem, Mohammad Shoyaib, and Haseena Khan.
Plant Molecular Biology Reporter 28 (3): 394-402

The Year 2008

Construction of Genetic Map of Jute (Corchorus olitorius L.) Based on RAPD Markers (2008)
Samiul Haque, Nadim Ashraf, Selina Begum, R.H. Sarkar and Haseena Khan.
Plant Tissue Cult. & Biotech. 18(2): 165-172

Identification of Drosophila Promoter Using Positional Differential Matrix and Support Vector Machine from Sequence Data (2008)
Azizul Haque, Firoz Anwar, Taskeed Jabid, Syed Murtuza Baker, Haseena Khan, Mohammad Nurul Islam, and Mohammad Shoyaib.
Plant Tissue Cult. & Biotech. 18(2): 123-130.

Identifying Simple Sequence Repeat (SSR) marker linked to mite tolerance in jute (2008).
Shamima Islam Keka, Md. Shamsuzzaman, Minhaz Uddin Pahloan Sultana Pervin and Md. Maksuder Rahman and Haseena Khan.
Bangladesh Journal of Botany 37(2): 161-171.

Pol II promoter prediction using characteristic 4-mer motifs: a machine learning approach (2008)
Firoz Anwar, Syed Murtuza Baker, Taskeed Jabid, Md. Mehedi Hasan, Mohammad Shoyaib, Haseena Khan and Ray Walshe.
BMC Bioinformatics 9:414

Tissue culture independent transformation for Corchorus olitorius (2008)
Abu Ashfaqur Sajib, Md. Shahidul Islam, Md. Shamim Reza, Arpita Bhowmik, Layla Fatema & Haseena Khan.
Plant Cell Tiss. Organ Cult. 95: 333-340.

Microsatellite markers for determining genetic identities and genetic diversity among jute cultivars (2008)
Haseena Khan, Jesmin Akter, Md Shahidul Islam, Abu Ashfaqur Sajib, Nadim Ashraf, Samiul Haque
Australian Journal of Crop Science 1(3): 97-107

The Year 2007

Determining genetic diversity of some jute varieties and accessions using RAPD markers (2007)
Samiul Haque, Selina Begum, R.H. Sarker and Haseena Khan. Plant Tissue Cult. & Biotech 17(2) 183-191

Development and use of microsatellites for study of DNA polymorphism, transferability and genetic diversity in jute (2007).
Ryazul Rouf Mir , Sharma S., R. Singh, S. Rustgi, A. Goyal, J. Kumar, A. Gaur, A.Tyagi, Haseena Khan, M. Sinha, H. S. Balyan and P. K. Gupta.
Euphytica, 161:413-427

The Year 2004

Method for Quality DNA Isolation from Different Parts of Jute Plant: Corchorus capsularis L. and C. olitorius L. (2004)
Samiul Haque, Nadim Ashraf, Aleya Awal, R. H. Sarker, Selina Begum and Haseena Khan.
Plant Tissue Cult. & Biotech. 14(2): 143-148.

The Year 2003

Use of RAPD fingerprinting for discriminating two populations of Hilsa shad (Tenulosa ilisha Ham.) from inland rivers of Bangladesh (2003).
Rehnuma Shifat, Anwara Begum, and Haseena Khan.
Journal of Biochemistry and Molecular Biology 36 (5)462-467

Distinction between cold sensitive and cold tolerant jute by a combined RAPD and AFLP study.
Mohammad Belayat Hossain, Aleya Awal, Mohammad Aminur Rahman, Samiul Haque, (2003)
Haseena Khan. Journal of Biochemistry and Molecular Biology 36 (5)427-432

The Year 2002

DNA Typing by RAPD for Differentiation between Two Species of Catfish, Heteropneustes Fossilis and Clarias Batrachus. (2002)
Haseena Khan, Fateema Parveen and Anwara Begum
Dhaka Univ. J. Biol. Sci. 11 (2) 1-8. (Bangladesh)

DNA Fingerprinting of Jute Germplasm by RAPD. (2002)
Mohammad Belayat Hossain, Samiul Haque and Haseena Khan.
Journal of Biochemistry and Molecular Biology 35(4), 414-419.

The Year 2000

Potential Improvement of Jute by Biotechnological Approaches. Proceedings of the Final Workshop on Application of Biotechnology in the Improvement of Jute, Kenaf and Allied Fibres-Phase II (IJO/AGR/10).
H. Khan, Z.I. Seraj, R.H. Sarker, L.Khandekar, S. Begum, N. Hossain, K.M. Ali, M. B. Hossain, F.T. Zohra, S. Haque and S. Hossain. (2000).
Publication of International Jute Organization (IJO)

The Year 2001

Transformation of jute (Corchorus capsularis L. vars CVL-1 and D-154) with the plasmids pCAMBIA1201, pBI 121 and pBINCHI 11 and high efficiency marker gene insertion in explants.
M.B. Hossain, M.H. Khan, E.H. Chowdhury, F.T. Zohra, Z.I. Seraj, H. Khan and R.H. Sarker. (1999).
Proceedings of the Workshop on Application of Biotechnology in the Improvement of Jute, Kenaf and Allied Fibres-Phase II (IJO/AGRI/10). Publication of Internation Jute Organization.